Class Hierarchy
- java.lang.Object
- org.opencb.cellbase.lib.builders.variation.AbstractVariationFile
- org.opencb.cellbase.app.cli.admin.AdminCliOptionsParser.BuildCommandOptions
- org.opencb.cellbase.app.cli.admin.AdminCliOptionsParser.DownloadCommandOptions
- org.opencb.cellbase.app.cli.admin.AdminCliOptionsParser.IndexCommandOptions
- org.opencb.cellbase.app.cli.admin.AdminCliOptionsParser.InstallCommandOptions
- org.opencb.cellbase.app.cli.admin.AdminCliOptionsParser.LoadCommandOptions
- org.opencb.cellbase.app.cli.admin.AdminCliOptionsParser.ServerCommandOptions
- org.opencb.cellbase.app.cli.admin.AdminMain
- org.opencb.cellbase.server.rest.AdminRestWebService
- org.opencb.cellbase.app.cli.main.annotation.BenchmarkDataWriter (implements org.opencb.commons.io.DataWriter<T>)
- org.opencb.cellbase.app.cli.main.annotation.BenchmarkTask (implements org.opencb.commons.run.ParallelTaskRunner.TaskWithException<T,R,E>)
- org.opencb.cellbase.lib.builders.formats.Cadd
- org.opencb.cellbase.lib.builders.formats.Cadd.CaddValues
- org.opencb.cellbase.core.variant.annotation.hgvs.CdnaCoord
- org.opencb.cellbase.client.rest.CellBaseClient
- org.opencb.cellbase.app.cli.main.CellBaseCliOptionsParser.QueryCommandOptions
- org.opencb.cellbase.app.cli.main.CellBaseCliOptionsParser.VariantAnnotationCommandOptions
- org.opencb.cellbase.core.config.CellBaseConfiguration
- org.opencb.cellbase.core.CellBaseDataResponse<T>
- org.opencb.cellbase.server.rest.CellBaseExceptionMapper (implements javax.ws.rs.ext.ExceptionMapper<E>)
- org.opencb.cellbase.core.serializer.CellBaseJsonFileSerializer (implements org.opencb.cellbase.core.serializer.CellBaseFileSerializer)
- org.opencb.cellbase.core.loader.CellBaseLoader (implements java.util.concurrent.Callable<V>)
- org.opencb.cellbase.app.cli.main.annotation.CellBaseLocalVariantAnnotator (implements org.opencb.cellbase.core.variant.annotation.VariantAnnotator)
- org.opencb.cellbase.app.cli.main.CellBaseMain
- org.opencb.cellbase.core.variant.annotation.CellBaseNormalizerSequenceAdaptor (implements org.opencb.biodata.tools.sequence.SequenceAdaptor)
- org.opencb.cellbase.lib.builders.CellBaseParser
- org.opencb.cellbase.app.cli.main.annotation.CellBaseWSVariantAnnotator (implements org.opencb.cellbase.core.variant.annotation.VariantAnnotator)
- org.opencb.cellbase.client.config.ClientConfiguration
- org.opencb.cellbase.lib.builders.clinical.variant.ClinicalIndexer
- org.opencb.cellbase.core.common.clinical.ClinicalVariant
- org.opencb.cellbase.core.common.clinical.ClinvarPublicSet
- org.opencb.cellbase.core.common.clinical.Cosmic
- org.opencb.cellbase.core.common.clinical.gwas.Gwas
- org.opencb.cellbase.lib.model.ClinicalVariation
- org.opencb.cellbase.app.cli.CliOptionsParser
- org.opencb.cellbase.app.cli.CliOptionsParser.CommonCommandOptions
- org.opencb.cellbase.app.cli.CliOptionsParser.GeneralOptions
- org.opencb.cellbase.app.cli.CliOptionsParser.SpeciesAndAssemblyCommandOptions
- org.opencb.cellbase.app.cli.CommandExecutor
- org.opencb.cellbase.core.variant.annotation.ConsequenceTypeCalculator
- org.opencb.cellbase.core.common.regulatory.ConservedRegion (implements java.io.Serializable)
- org.opencb.cellbase.lib.builders.formats.ConservedRegionFeature
- org.opencb.cellbase.lib.builders.formats.ConservedRegionFeature.ConservedRegionSource
- org.opencb.cellbase.server.rest.CORSFilter (implements javax.servlet.Filter)
- org.opencb.cellbase.core.config.DatabaseCredentials
- org.opencb.cellbase.core.config.Databases
- org.opencb.commons.datastore.core.DataResult<T>
- org.opencb.cellbase.core.api.DBAdaptorFactory
- org.opencb.cellbase.core.common.genedisease.Disgenet
- org.opencb.cellbase.core.common.DNASequenceUtils
- org.opencb.cellbase.server.rest.network.DotServer
- org.opencb.cellbase.lib.download.DownloadFile
- org.opencb.cellbase.lib.download.DownloadManager
- org.opencb.cellbase.core.config.DownloadProperties
- org.opencb.cellbase.core.config.DownloadProperties.EnsemblProperties
- org.opencb.cellbase.core.config.DownloadProperties.URLProperties
- org.opencb.cellbase.core.common.drug.Drug
- org.opencb.cellbase.lib.builders.DrugParser
- org.opencb.cellbase.core.common.drug.DrugPartnerInteraction
- org.opencb.cellbase.lib.download.EnsemblInfo
- org.opencb.cellbase.lib.EtlCommons
- org.opencb.cellbase.lib.builders.formats.GeneExpressionAtlas
- org.opencb.cellbase.lib.builders.formats.GeneExpressionAtlas.Tissue
- org.opencb.cellbase.lib.builders.GeneParserUtils
- org.opencb.cellbase.server.rest.GenericRestWSServer (implements org.opencb.cellbase.server.rest.IWSServer)
- org.opencb.cellbase.lib.builders.utils.GenomeSequenceUtils
- org.opencb.cellbase.core.common.GitRepositoryState
- org.opencb.cellbase.client.rest.models.GroupByFields
- org.opencb.cellbase.client.rest.models.GroupCount
- org.opencb.cellbase.core.common.clinical.gwas.GwasStudy
- org.opencb.cellbase.core.common.clinical.gwas.GwasTest
- org.opencb.cellbase.core.common.clinical.gwas.GwasTrait
- org.opencb.cellbase.core.monitor.HealthStatus
- org.opencb.cellbase.core.monitor.HealthStatus.ApplicationDetails
- org.opencb.cellbase.core.monitor.HealthStatus.ApplicationDetails.DependenciesStatus
- org.opencb.cellbase.core.monitor.HealthStatus.ApplicationDetails.DependenciesStatus.DatastoreDependenciesStatus
- org.opencb.cellbase.core.monitor.HealthStatus.ApplicationDetails.DependenciesStatus.DatastoreDependenciesStatus.DatastoreStatus
- org.opencb.cellbase.core.monitor.HealthStatus.ApplicationDetails.Version
- org.opencb.cellbase.core.monitor.HealthStatus.Infrastructure
- org.opencb.cellbase.core.monitor.HealthStatus.Service
- org.opencb.cellbase.core.variant.annotation.hgvs.HgvsCalculator
- org.opencb.cellbase.core.variant.annotation.hgvs.HgvsStringBuilder
- org.opencb.cellbase.server.rest.genomic.Histogram
- org.opencb.cellbase.lib.indexer.IndexManager
- org.opencb.cellbase.lib.install.InstallManager
- org.opencb.cellbase.core.common.drug.Interactor
- org.opencb.cellbase.server.rest.genomic.Interval
- org.opencb.cellbase.core.common.IntervalFeatureFrequency
- com.fasterxml.jackson.databind.JsonDeserializer<T> (implements com.fasterxml.jackson.databind.deser.NullValueProvider)
- org.opencb.cellbase.app.cli.main.annotation.JsonStringAnnotatorTask (implements org.opencb.commons.run.ParallelTaskRunner.TaskWithException<T,R,E>)
- org.opencb.cellbase.core.loader.LoadRunner
- org.opencb.cellbase.core.common.regulatory.MirnaDisease (implements java.io.Serializable)
- org.opencb.cellbase.core.common.regulatory.MirnaGene (implements java.io.Serializable)
- org.opencb.cellbase.core.common.regulatory.MirnaGeneToMature (implements java.io.Serializable)
- org.opencb.cellbase.core.common.regulatory.MirnaMature (implements java.io.Serializable)
- org.opencb.cellbase.core.common.regulatory.MirnaTarget (implements java.io.Serializable)
- org.opencb.cellbase.core.common.regulatory.MirnaToGene (implements java.io.Serializable)
- org.opencb.cellbase.lib.impl.MongoDBAdaptor
- org.opencb.cellbase.lib.MongoDBCollectionConfiguration
- org.opencb.cellbase.core.config.MongoDBDatabaseCredentials.ReplicaSet
- org.opencb.cellbase.lib.install.MongoDBShardUtils
- org.opencb.cellbase.lib.loader.converters.MongoDBTypeConverter<DATAMODEL,STORAGESCHEMA> (implements org.opencb.cellbase.core.loader.CellBaseTypeConverter<DataModel,StorageSchema>)
- org.opencb.cellbase.core.monitor.Monitor
- org.opencb.cellbase.client.rest.ParentRestClient<T>
- org.opencb.cellbase.core.common.drug.Partner
- org.opencb.cellbase.core.variant.PhasedQueryManager
- org.opencb.cellbase.app.cli.main.annotation.PopulationFrequenciesAnnotator (implements org.opencb.cellbase.core.variant.annotation.VariantAnnotator)
- org.opencb.cellbase.core.common.regulatory.Pwm (implements java.io.Serializable)
- org.opencb.cellbase.core.common.regulatory.RegulatoryRegion (implements java.io.Serializable)
- org.opencb.cellbase.core.config.Rest
- org.opencb.cellbase.client.config.RestConfig
- org.opencb.cellbase.server.RestServer
- org.opencb.cellbase.app.cli.main.annotation.SequenceOntologyTermComparisonObject
- org.opencb.cellbase.core.config.ServerProperties
- org.opencb.cellbase.core.common.Species
- org.opencb.cellbase.core.config.SpeciesConfiguration
- org.opencb.cellbase.core.config.SpeciesConfiguration.Assembly
- org.opencb.cellbase.core.config.SpeciesConfiguration.ShardConfig
- org.opencb.cellbase.core.config.SpeciesConfiguration.ShardRange
- org.opencb.cellbase.core.config.SpeciesConfiguration.Zone
- org.opencb.cellbase.core.config.SpeciesProperties
- org.opencb.cellbase.lib.SpeciesUtils
- org.opencb.cellbase.lib.builders.utils.StringUtils
- org.opencb.cellbase.core.common.regulatory.Tfbs (implements java.io.Serializable)
- java.lang.Throwable (implements java.io.Serializable)
- org.opencb.cellbase.core.variant.annotation.VariantAnnotationCalculator
- org.opencb.cellbase.app.cli.main.annotation.VariantAnnotationDiff
- org.opencb.cellbase.core.variant.annotation.VariantAnnotationUtils
- org.opencb.cellbase.app.cli.main.annotation.VariantAnnotatorTask (implements org.opencb.commons.run.ParallelTaskRunner.TaskWithException<T,R,E>)
- org.opencb.cellbase.app.cli.main.annotation.indexers.VariantIndexer
- org.opencb.cellbase.lib.VariantMongoIterator (implements java.util.Iterator<E>)
- org.opencb.cellbase.app.cli.main.annotation.VariationDataReader (implements org.opencb.commons.io.DataReader<T>)
- org.opencb.cellbase.lib.builders.utils.VariationUtils
- org.opencb.cellbase.app.cli.main.annotation.VcfStringAnnotatorTask (implements org.opencb.commons.run.ParallelTaskRunner.TaskWithException<T,R,E>)
- org.opencb.cellbase.app.cli.main.annotation.VcfStringAnnotatorTask.SharedContext
- org.opencb.cellbase.app.cli.main.annotation.VcfVariantAnnotator (implements org.opencb.cellbase.core.variant.annotation.VariantAnnotator)
- org.opencb.cellbase.core.common.drug.XRef
Interface Hierarchy
Enum Hierarchy
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