public class EtlCommons extends Object
Constructor and Description |
---|
EtlCommons() |
Modifier and Type | Method and Description |
---|---|
static Long |
countFileLines(Path filePath) |
static boolean |
isMissing(String string) |
static boolean |
runCommandLineProcess(File workingDirectory,
String binPath,
List<String> args,
String logFilePath) |
public static final String GENOME_DATA
public static final String GENE_DATA
public static final String GENE_DISEASE_ASSOCIATION_DATA
public static final String VARIATION_DATA
public static final String VARIATION_FUNCTIONAL_SCORE_DATA
public static final String REGULATION_DATA
public static final String PROTEIN_DATA
public static final String CONSERVATION_DATA
public static final String CLINICAL_VARIANTS_DATA
public static final String CLINICAL_VARIANTS_FOLDER
public static final String CLINVAR_XML_FILE
public static final String CLINVAR_EFO_FILE
public static final String CLINVAR_SUMMARY_FILE
public static final String CLINVAR_VARIATION_ALLELE_FILE
public static final String IARCTP53_FILE
public static final String GWAS_FILE
public static final String COSMIC_FILE
public static final String DBSNP_FILE
public static final String STRUCTURAL_VARIANTS_DATA
public static final String REPEATS_DATA
public static final String GENOME_INFO_DATA
public static final String DISGENET_DATA
public static final String HPO_DATA
public static final String CADD_DATA
public static final String PPI_DATA
public static final String DRUG_DATA
public static final String CLINVAR_DATA
public static final String DOCM_DATA
public static final String COSMIC_DATA
public static final String GWAS_DATA
public static final String IARCTP53_GERMLINE_FILE
public static final String IARCTP53_GERMLINE_REFERENCES_FILE
public static final String IARCTP53_SOMATIC_FILE
public static final String IARCTP53_SOMATIC_REFERENCES_FILE
public static final String PROTEIN_FUNCTIONAL_PREDICTION_DATA
public static final String GERP_SUBDIRECTORY
public static final String GERP_FILE
public static final String CLINICAL_VARIANTS_JSON_FILE
public static final String CLINICAL_VARIANTS_ANNOTATED_JSON_FILE
public static final String DOCM_FILE
public static final String DOCM_NAME
public static final String STRUCTURAL_VARIANTS_FOLDER
public static final String DGV_FILE
public static final String DGV_VERSION_FILE
public static final String STRUCTURAL_VARIANTS_JSON
public static final String TRF_FILE
public static final String TRF_VERSION_FILE
public static final String GSD_FILE
public static final String GSD_VERSION_FILE
public static final String WM_FILE
public static final String WM_VERSION_FILE
public static final String REPEATS_FOLDER
public static final String REPEATS_JSON
public static final String REGULATORY_FEATURES_FILE
public static final String MOTIF_FEATURES_FILE
public static boolean runCommandLineProcess(File workingDirectory, String binPath, List<String> args, String logFilePath) throws IOException, InterruptedException
IOException
InterruptedException
public static boolean isMissing(String string)
public static Long countFileLines(Path filePath) throws IOException
IOException
Copyright © 2019. All rights reserved.