All Classes
AbstractVariationFile
AdminCliOptionsParser
AdminMain
AdminRestWebService
AnnotationBasedPhasedQueryManager
BenchmarkDataWriter
BenchmarkTask
BuildCommandExecutor
Cadd
CaddAllAnnotationParser
CaddScoreParser
CdnaCoord
CdnaCoord.Landmark
CellBaseClient
CellBaseCliOptionsParser
CellBaseConfiguration
CellBaseConfiguration.ConfigurationFileFormat
CellBaseDataResponse
CellBaseDataResult
CellBaseDBAdaptor
CellbaseException
CellBaseExceptionMapper
CellBaseFileSerializer
CellBaseJsonFileSerializer
CellBaseLoader
CellBaseLocalVariantAnnotator
CellBaseMain
CellBaseNormalizerSequenceAdaptor
CellBaseParser
CellBaseSerializer
CellBaseTypeConverter
CellBaseWSVariantAnnotator
ChromosomeWSServer
ClientConfiguration
ClinicalDBAdaptor
ClinicalDBAdaptor.QueryParams
ClinicalIndexer
ClinicalLegacyMongoDBAdaptor
ClinicalLegacyWSServer
ClinicalMongoDBAdaptor
ClinicalPhasedQueryManager
ClinicalVariant
ClinicalVariantClient
ClinicalVariantParser
ClinicalVariation
ClinicalWSServer
ClinVarIndexer
ClinVarParser
ClinvarPublicSet
CliOptionsParser
CommandExecutor
ConsequenceTypeBNDCalculator
ConsequenceTypeCalculator
ConsequenceTypeCNVGainCalculator
ConsequenceTypeDeletionCalculator
ConsequenceTypeGenericRegionCalculator
ConsequenceTypeInsertionCalculator
ConsequenceTypeMNVCalculator
ConsequenceTypeSNVCalculator
ConservationDBAdaptor
ConservationDBAdaptor.QueryParams
ConservationMongoDBAdaptor
ConservationParser
ConservedRegion
ConservedRegionFeature
ConservedRegionFeature.ConservedRegionSource
CORSFilter
Cosmic
CosmicIndexer
CosmicParser
CustomAnnotationPhasedQueryManager
CustomAnnotationVariantIndexer
DatabaseCredentials
Databases
DBAdaptorFactory
DgvParser
Disgenet
DisgenetParser
DNASequenceUtils
DOCMIndexer
DotServer
DownloadCommandExecutor
DownloadFile
DownloadManager
DownloadProperties
DownloadProperties.EnsemblProperties
DownloadProperties.URLProperties
Drug
DrugParser
DrugPartnerInteraction
DrugResponseClassificationMixIn
DrugResponseClassificationMixIn.Deserializer
EnsemblInfo
EtlCommons
FeatureClient
FeatureDBAdaptor
GeneClient
GeneConverter
GeneDBAdaptor
GeneDBAdaptor.QueryParams
GeneExpressionAtlas
GeneExpressionAtlas.Tissue
GeneExpressionAtlasParser
GeneMongoDBAdaptor
GeneParser
GeneParserUtils
GenericClient
GenericRestWSServer
GeneWSServer
GenomeDBAdaptor
GenomeDBAdaptor.QueryParams
GenomeMongoDBAdaptor
GenomeSequenceFastaParser
GenomeSequenceUtils
GenomicRegionClient
GitRepositoryState
GroupByFields
GroupCount
Gwas
GwasParser
GwasStudy
GwasTest
GwasTrait
HealthStatus
HealthStatus.ApplicationDetails
HealthStatus.ApplicationDetails.DependenciesStatus
HealthStatus.ApplicationDetails.DependenciesStatus.DatastoreDependenciesStatus
HealthStatus.ApplicationDetails.DependenciesStatus.DatastoreDependenciesStatus.DatastoreStatus
HealthStatus.ApplicationDetails.Version
HealthStatus.Infrastructure
HealthStatus.Service
HealthStatus.ServiceStatus
HgvsCalculator
HgvsDeletionCalculator
HgvsInsertionCalculator
HgvsSNVCalculator
HgvsStringBuilder
Histogram
IARCTP53Indexer
IdWSServer
IndexCommandExecutor
IndexManager
InstallCommandExecutor
InstallManager
InteractionParser
Interactor
Interval
IntervalFeatureFrequency
IWSServer
JsonStringAnnotatorTask
LoadCommandExecutor
LoaderException
LoadRunner
MetaClient
MetaMongoDBAdaptor
MetaWSServer
MirnaDisease
MirnaGene
MirnaGeneToMature
MiRnaGeneWSServer
MirnaMature
MiRnaMatureWSServer
MirnaTarget
MirnaToGene
MongoDBAdaptor
MongoDBAdaptorFactory
MongoDBCellBaseLoader
MongoDBCollectionConfiguration
MongoDBDatabaseCredentials
MongoDBDatabaseCredentials.ReplicaSet
MongoDBShardUtils
MongoDBTypeConverter
Monitor
ParentRestClient
Partner
PathwayDBAdaptor
PathwayWSServer
PathwayWSServerMongo
PhasedQueryManager
PhenotypeWSServer
PopulationFrequenciesAnnotator
PopulationFrequencyPhasedQueryManager
PopulationFrequencyVariantIndexer
ProteinClient
ProteinDBAdaptor
ProteinDBAdaptor.QueryParams
ProteinMongoDBAdaptor
ProteinParser
ProteinProteinInteractionDBAdaptor
ProteinProteinInteractionDBAdaptor.QueryParams
ProteinProteinInteractionMongoDBAdaptor
ProteinProteinInteractionWSServer
ProteinWSServer
Pwm
QueryCommandExecutor
RegionWSServer
RegulationDBAdaptor
RegulationDBAdaptor.FeatureType
RegulationDBAdaptor.QueryParams
RegulationMongoDBAdaptor
RegulatoryRegion
RegulatoryRegionParser
RegulatoryWSServer
RepeatsDBAdaptor
RepeatsDBAdaptor.QueryParams
RepeatsMongoDBAdaptor
RepeatsParser
Rest
RestConfig
RestServer
SequenceOntologyTermComparisonObject
ServerCommandExecutor
ServerProperties
Species
SpeciesConfiguration
SpeciesConfiguration.Assembly
SpeciesConfiguration.ShardConfig
SpeciesConfiguration.ShardRange
SpeciesConfiguration.Zone
SpeciesException
SpeciesProperties
SpeciesUtils
SpeciesWSServer
StringUtils
Tfbs
TfWSServer
TranscriptClient
TranscriptDBAdaptor
TranscriptDBAdaptor.QueryParams
TranscriptMongoDBAdaptor
TranscriptWSServer
UnsupportedURLVariantFormat
UtilsWSServer
VariantAnnotationCalculator
VariantAnnotationCommandExecutor
VariantAnnotationCommandExecutor.FileFormat
VariantAnnotationDBAdaptor
VariantAnnotationDiff
VariantAnnotationUtils
VariantAnnotator
VariantAnnotatorTask
VariantClient
VariantDBAdaptor
VariantDBAdaptor.QueryParams
VariantIndexer
VariantMongoDBAdaptor
VariantMongoIterator
VariantWSServer
VariationClient
VariationConverter
VariationDataReader
VariationFeatureFile
VariationFile
VariationParser
VariationPhenotypeAnnotationParser
VariationSynonymFile
VariationTranscriptFile
VariationUtils
VariationWSServer
VcfStringAnnotatorTask
VcfStringAnnotatorTask.SharedContext
VcfVariantAnnotator
VersionException
XRef
XRefDBAdaptor
XRefDBAdaptor.QueryParams
XRefMongoDBAdaptor