public interface GenomeDBAdaptor extends CellBaseDBAdaptor
Modifier and Type | Interface and Description |
---|---|
static class |
GenomeDBAdaptor.QueryParams |
Modifier and Type | Method and Description |
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CellBaseDataResult |
getChromosomeInfo(String chromosomeId,
org.opencb.commons.datastore.core.QueryOptions queryOptions) |
List<CellBaseDataResult<org.opencb.biodata.models.core.GenomicScoreRegion<Float>>> |
getConservation(List<org.opencb.biodata.models.core.Region> regions,
org.opencb.commons.datastore.core.QueryOptions queryOptions) |
default CellBaseDataResult<org.opencb.biodata.models.core.GenomicScoreRegion<Float>> |
getConservation(org.opencb.biodata.models.core.Region region,
org.opencb.commons.datastore.core.QueryOptions queryOptions) |
default List<CellBaseDataResult<org.opencb.biodata.models.variant.avro.Cytoband>> |
getCytobands(List<org.opencb.biodata.models.core.Region> regionList)
Deprecated.
|
default List<CellBaseDataResult<org.opencb.biodata.models.variant.avro.Cytoband>> |
getCytobands(List<org.opencb.biodata.models.core.Region> regionList,
org.opencb.commons.datastore.core.QueryOptions queryOptions) |
CellBaseDataResult<org.opencb.biodata.models.variant.avro.Cytoband> |
getCytobands(org.opencb.biodata.models.core.Region region,
org.opencb.commons.datastore.core.QueryOptions queryOptions) |
CellBaseDataResult |
getGenomeInfo(org.opencb.commons.datastore.core.QueryOptions queryOptions) |
default List<CellBaseDataResult<org.opencb.biodata.models.core.GenomeSequenceFeature>> |
getGenomicSequence(List<org.opencb.commons.datastore.core.Query> queries,
org.opencb.commons.datastore.core.QueryOptions queryOptions)
Deprecated.
|
CellBaseDataResult<org.opencb.biodata.models.core.GenomeSequenceFeature> |
getGenomicSequence(org.opencb.commons.datastore.core.Query query,
org.opencb.commons.datastore.core.QueryOptions queryOptions)
Deprecated.
|
default List<CellBaseDataResult<org.opencb.biodata.models.core.GenomeSequenceFeature>> |
getSequence(List<org.opencb.biodata.models.core.Region> regions,
org.opencb.commons.datastore.core.QueryOptions queryOptions) |
CellBaseDataResult<org.opencb.biodata.models.core.GenomeSequenceFeature> |
getSequence(org.opencb.biodata.models.core.Region region,
org.opencb.commons.datastore.core.QueryOptions queryOptions) |
count, count, distinct, distinct, forEach, forEach, get, get, groupBy, groupBy, iterator, iterator, nativeGet, nativeGet, nativeIterator, nativeIterator, rank, stats, stats, update
spliterator
CellBaseDataResult getGenomeInfo(org.opencb.commons.datastore.core.QueryOptions queryOptions)
CellBaseDataResult getChromosomeInfo(String chromosomeId, org.opencb.commons.datastore.core.QueryOptions queryOptions)
@Deprecated CellBaseDataResult<org.opencb.biodata.models.core.GenomeSequenceFeature> getGenomicSequence(org.opencb.commons.datastore.core.Query query, org.opencb.commons.datastore.core.QueryOptions queryOptions)
@Deprecated default List<CellBaseDataResult<org.opencb.biodata.models.core.GenomeSequenceFeature>> getGenomicSequence(List<org.opencb.commons.datastore.core.Query> queries, org.opencb.commons.datastore.core.QueryOptions queryOptions)
CellBaseDataResult<org.opencb.biodata.models.core.GenomeSequenceFeature> getSequence(org.opencb.biodata.models.core.Region region, org.opencb.commons.datastore.core.QueryOptions queryOptions)
default List<CellBaseDataResult<org.opencb.biodata.models.core.GenomeSequenceFeature>> getSequence(List<org.opencb.biodata.models.core.Region> regions, org.opencb.commons.datastore.core.QueryOptions queryOptions)
default CellBaseDataResult<org.opencb.biodata.models.core.GenomicScoreRegion<Float>> getConservation(org.opencb.biodata.models.core.Region region, org.opencb.commons.datastore.core.QueryOptions queryOptions)
List<CellBaseDataResult<org.opencb.biodata.models.core.GenomicScoreRegion<Float>>> getConservation(List<org.opencb.biodata.models.core.Region> regions, org.opencb.commons.datastore.core.QueryOptions queryOptions)
default List<CellBaseDataResult<org.opencb.biodata.models.variant.avro.Cytoband>> getCytobands(List<org.opencb.biodata.models.core.Region> regionList, org.opencb.commons.datastore.core.QueryOptions queryOptions)
@Deprecated default List<CellBaseDataResult<org.opencb.biodata.models.variant.avro.Cytoband>> getCytobands(List<org.opencb.biodata.models.core.Region> regionList)
CellBaseDataResult<org.opencb.biodata.models.variant.avro.Cytoband> getCytobands(org.opencb.biodata.models.core.Region region, org.opencb.commons.datastore.core.QueryOptions queryOptions)
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