Package | Description |
---|---|
org.opencb.cellbase.core.api | |
org.opencb.cellbase.core.variant.annotation | |
org.opencb.cellbase.core.variant.annotation.hgvs | |
org.opencb.cellbase.lib.impl |
Modifier and Type | Method and Description |
---|---|
abstract GenomeDBAdaptor |
DBAdaptorFactory.getGenomeDBAdaptor(String species) |
abstract GenomeDBAdaptor |
DBAdaptorFactory.getGenomeDBAdaptor(String species,
String assembly) |
Modifier and Type | Field and Description |
---|---|
protected GenomeDBAdaptor |
ConsequenceTypeCalculator.genomeDBAdaptor |
Constructor and Description |
---|
CellBaseNormalizerSequenceAdaptor(GenomeDBAdaptor genomeDBAdaptor) |
ConsequenceTypeDeletionCalculator(GenomeDBAdaptor genomeDBAdaptor) |
ConsequenceTypeInsertionCalculator(GenomeDBAdaptor genomeDBAdaptor) |
ConsequenceTypeMNVCalculator(GenomeDBAdaptor genomeDBAdaptor) |
Modifier and Type | Field and Description |
---|---|
protected GenomeDBAdaptor |
HgvsCalculator.genomeDBAdaptor |
Constructor and Description |
---|
HgvsCalculator(GenomeDBAdaptor genomeDBAdaptor) |
HgvsDeletionCalculator(GenomeDBAdaptor genomeDBAdaptor) |
HgvsInsertionCalculator(GenomeDBAdaptor genomeDBAdaptor) |
HgvsSNVCalculator(GenomeDBAdaptor genomeDBAdaptor) |
Modifier and Type | Class and Description |
---|---|
class |
GenomeMongoDBAdaptor
Created by imedina on 07/12/15.
|
Modifier and Type | Method and Description |
---|---|
GenomeDBAdaptor |
MongoDBAdaptorFactory.getGenomeDBAdaptor(String species) |
GenomeDBAdaptor |
MongoDBAdaptorFactory.getGenomeDBAdaptor(String species,
String assembly) |
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