All Methods Instance Methods Abstract Methods Concrete Methods
Modifier and Type |
Method and Description |
abstract void |
close() |
protected String |
getAssembly(SpeciesConfiguration speciesConfiguration,
String assemblyName) |
CellBaseConfiguration |
getCellBaseConfiguration() |
abstract ClinicalDBAdaptor |
getClinicalDBAdaptor(String species) |
abstract ClinicalDBAdaptor |
getClinicalDBAdaptor(String species,
String assembly) |
abstract ClinicalDBAdaptor |
getClinicalLegacyDBAdaptor(String species) |
abstract ClinicalDBAdaptor |
getClinicalLegacyDBAdaptor(String species,
String assembly) |
abstract ConservationDBAdaptor |
getConservationDBAdaptor(String species) |
abstract ConservationDBAdaptor |
getConservationDBAdaptor(String species,
String assembly) |
abstract Map<String,HealthStatus.ApplicationDetails.DependenciesStatus.DatastoreDependenciesStatus.DatastoreStatus> |
getDatabaseStatus(String species,
String assembly) |
abstract GeneDBAdaptor |
getGeneDBAdaptor(String species) |
abstract GeneDBAdaptor |
getGeneDBAdaptor(String species,
String assembly) |
abstract GenomeDBAdaptor |
getGenomeDBAdaptor(String species) |
abstract GenomeDBAdaptor |
getGenomeDBAdaptor(String species,
String assembly) |
abstract CellBaseDBAdaptor |
getMetaDBAdaptor(String species) |
abstract CellBaseDBAdaptor |
getMetaDBAdaptor(String species,
String assembly) |
abstract ProteinDBAdaptor |
getProteinDBAdaptor(String species) |
abstract ProteinDBAdaptor |
getProteinDBAdaptor(String species,
String assembly) |
abstract ProteinProteinInteractionDBAdaptor |
getProteinProteinInteractionDBAdaptor(String species) |
abstract ProteinProteinInteractionDBAdaptor |
getProteinProteinInteractionDBAdaptor(String species,
String assembly) |
abstract RegulationDBAdaptor |
getRegulationDBAdaptor(String species) |
abstract RegulationDBAdaptor |
getRegulationDBAdaptor(String species,
String assembly) |
abstract RepeatsDBAdaptor |
getRepeatsDBAdaptor(String species,
String assembly) |
protected SpeciesConfiguration |
getSpecies(String speciesName) |
abstract TranscriptDBAdaptor |
getTranscriptDBAdaptor(String species) |
abstract TranscriptDBAdaptor |
getTranscriptDBAdaptor(String species,
String assembly) |
abstract VariantDBAdaptor |
getVariationDBAdaptor(String species) |
abstract VariantDBAdaptor |
getVariationDBAdaptor(String species,
String assembly) |
abstract XRefDBAdaptor |
getXRefDBAdaptor(String species) |
abstract XRefDBAdaptor |
getXRefDBAdaptor(String species,
String assembly) |
abstract void |
open(String species,
String version) |
void |
setConfiguration(CellBaseConfiguration cellBaseConfiguration) |