public class CellBaseNormalizerSequenceAdaptor extends Object implements org.opencb.biodata.tools.sequence.SequenceAdaptor
Constructor and Description |
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CellBaseNormalizerSequenceAdaptor(GenomeDBAdaptor genomeDBAdaptor) |
Modifier and Type | Method and Description |
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String |
query(String contig,
int start,
int end)
Returns sequence from contig "contig" in the range [start, end] (1-based, both inclusive).
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public CellBaseNormalizerSequenceAdaptor(GenomeDBAdaptor genomeDBAdaptor)
public String query(String contig, int start, int end) throws Exception
query
in interface org.opencb.biodata.tools.sequence.SequenceAdaptor
contig
- contig id of intereststart
- start coordinate of contigend
- end coordinate of contigException
- if something goes wrongRuntimeException
- if something goes wrongCopyright © 2019. All rights reserved.