org.opencb.cellbase.lib.builders

Class CellBaseParser

java.lang.Object

org.opencb.cellbase.lib.builders.CellBaseParser

Direct Known Subclasses:

CaddAllAnnotationParser, CaddScoreParser, ClinicalVariantParser, ClinVarParser, ConservationParser, CosmicParser, DgvParser, DisgenetParser, GeneExpressionAtlasParser, GeneParser, GenomeSequenceFastaParser, GwasParser, InteractionParser, ProteinParser, RegulatoryRegionParser, RepeatsParser, VariationParser, VariationPhenotypeAnnotationParser

public abstract class CellBaseParser
extends Object

Created by imedina on 30/08/14.

Field Summary

Fields

Modifier and Type	Field and Description
protected org.slf4j.Logger	logger
protected CellBaseSerializer	serializer

Constructor Summary

Constructors

Constructor and Description
CellBaseParser(CellBaseSerializer serializer)

Method Summary

Modifier and Type	Method and Description
void	disconnect()
abstract void	parse()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

serializer

protected CellBaseSerializer serializer

logger

protected org.slf4j.Logger logger

Constructor Detail

CellBaseParser

public CellBaseParser(CellBaseSerializer serializer)

Method Detail

parse

public abstract void parse()
                    throws Exception

Throws:

Exception

disconnect

public void disconnect()