org.opencb.cellbase.lib.builders.clinical.variant

Class CosmicParser

java.lang.Object

org.opencb.cellbase.lib.builders.CellBaseParser

org.opencb.cellbase.lib.builders.clinical.variant.CosmicParser

Deprecated.

@Deprecated
public class CosmicParser
extends CellBaseParser

Since:

October 08, 2014

Author:

by jpflorido on 26/05/14., Luis Miguel Cruz.

Field Summary

Fields inherited from class org.opencb.cellbase.lib.builders.CellBaseParser

logger, serializer

Constructor Summary

Constructors

Constructor and Description
CosmicParser(Path cosmicFilePath, CellBaseSerializer serializer, String assembly) Deprecated.

Method Summary

Modifier and Type	Method and Description
void	parse() Deprecated.
boolean	parseChromosomeStartAndEnd(Cosmic cosmic) Deprecated.

Methods inherited from class org.opencb.cellbase.lib.builders.CellBaseParser

disconnect

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CosmicParser

public CosmicParser(Path cosmicFilePath,
                    CellBaseSerializer serializer,
                    String assembly)

Deprecated.

Method Detail

parse

public void parse()

Deprecated.

Specified by:

parse in class CellBaseParser

parseChromosomeStartAndEnd

public boolean parseChromosomeStartAndEnd(Cosmic cosmic)

Deprecated.