public class DOCMIndexer extends ClinicalIndexer
genomeSequenceFilePath, HAPLOTYPE_FIELD_NAME, HAPLOTYPE_STRING_SEPARATOR, jsonObjectWriter, logger, mapper, normalize, normalizer, numberIndexedRecords, numberNewVariants, numberVariantUpdates, rdb, totalNumberRecords
Constructor and Description |
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DOCMIndexer(Path docmFile,
boolean normalize,
Path genomeSequenceFilePath,
String assembly,
org.rocksdb.RocksDB rdb) |
Modifier and Type | Method and Description |
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void |
index() |
addHaplotypeProperty, createGeneGenomicFeature, getAlleleOriginList, getNormalisedVariantString, getVariantAnnotation, getVariantClassification
public DOCMIndexer(Path docmFile, boolean normalize, Path genomeSequenceFilePath, String assembly, org.rocksdb.RocksDB rdb) throws IOException
IOException
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