org.opencb.cellbase.server.rest.feature

Class ProteinWSServer

java.lang.Object

org.opencb.cellbase.server.rest.GenericRestWSServer

org.opencb.cellbase.server.rest.feature.ProteinWSServer

All Implemented Interfaces:

IWSServer

@Path(value="/{version}/{species}/feature/protein")
 @Produces(value="application/json")
public class ProteinWSServer
extends GenericRestWSServer

Field Summary

Fields inherited from class org.opencb.cellbase.server.rest.GenericRestWSServer

assembly, cellBaseConfiguration, count, dbAdaptorFactory, exclude, httpServletRequest, include, initialized, jsonObjectMapper, jsonObjectWriter, limit, logger, monitor, outputFormat, params, query, queryOptions, SERVICE_START_DATE, skip, skipCount, sort, species, startTime, uriInfo, version, WATCH

Constructor Summary

Constructors

Constructor and Description
ProteinWSServer(String version, String species, javax.ws.rs.core.UriInfo uriInfo, javax.servlet.http.HttpServletRequest hsr)

Method Summary

Modifier and Type	Method and Description
javax.ws.rs.core.Response	defaultMethod()
javax.ws.rs.core.Response	getAll()
javax.ws.rs.core.Response	getGene(String query)
javax.ws.rs.core.Response	getInfoByEnsemblId(String id)
javax.ws.rs.core.Response	getModel()
javax.ws.rs.core.Response	getproteinByName(String id) Deprecated.
javax.ws.rs.core.Response	getReference(String query) Deprecated.
javax.ws.rs.core.Response	getSequence(String proteinId)
javax.ws.rs.core.Response	getSubstitutionScores(String id)
javax.ws.rs.core.Response	getTranscript(String query)
javax.ws.rs.core.Response	help()

Methods inherited from class org.opencb.cellbase.server.rest.GenericRestWSServer

createErrorResponse, createErrorResponse, createJsonResponse, createModelResponse, createOkResponse, createOkResponse, createOkResponse, createQueries, createStringResponse, generateResponse, generateResponse, logQuery, parseQueryParams

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.opencb.cellbase.server.rest.IWSServer

count, first, stats

Constructor Detail

ProteinWSServer

public ProteinWSServer(@PathParam(value="version")
                       String version,
                       @PathParam(value="species")
                       String species,
                       @Context
                       javax.ws.rs.core.UriInfo uriInfo,
                       @Context
                       javax.servlet.http.HttpServletRequest hsr)
                throws VersionException,
                       SpeciesException,
                       IOException,
                       CellbaseException

Throws:

VersionException

SpeciesException

IOException

CellbaseException

Method Detail

getModel

@GET
 @Path(value="/model")
public javax.ws.rs.core.Response getModel()

getInfoByEnsemblId

@GET
 @Path(value="/{proteinId}/info")
public javax.ws.rs.core.Response getInfoByEnsemblId(@PathParam(value="proteinId")
                                                                                           String id)

getAll

@GET
 @Path(value="/search")
public javax.ws.rs.core.Response getAll()

getSubstitutionScores

@GET
 @Path(value="/{proteinId}/substitution_scores")
public javax.ws.rs.core.Response getSubstitutionScores(@PathParam(value="proteinId")
                                                                                                             String id)

getproteinByName

@GET
 @Path(value="/{proteinId}/name")
 @Deprecated
public javax.ws.rs.core.Response getproteinByName(@PathParam(value="proteinId")
                                                                                                      String id)

Deprecated.

getGene

@GET
 @Path(value="/{proteinId}/gene")
public javax.ws.rs.core.Response getGene(@PathParam(value="proteinId")
                                                                                String query)

getTranscript

@GET
 @Path(value="/{proteinId}/transcript")
public javax.ws.rs.core.Response getTranscript(@PathParam(value="proteinId")
                                                                                            String query)

getReference

@Deprecated
 @GET
 @Path(value="/{proteinId}/reference")
public javax.ws.rs.core.Response getReference(@PathParam(value="proteinId")
                                                                                                       String query)

Deprecated.

getSequence

@GET
 @Path(value="/{proteinId}/sequence")
public javax.ws.rs.core.Response getSequence(@PathParam(value="proteinId")
                                                                                        String proteinId)

defaultMethod

@GET
public javax.ws.rs.core.Response defaultMethod()

Overrides:

defaultMethod in class GenericRestWSServer

help

@GET
 @Path(value="/help")
public javax.ws.rs.core.Response help()

Specified by:

help in interface IWSServer

Overrides:

help in class GenericRestWSServer