@Path(value="/{version}/{species}/feature/transcript") @Produces(value="application/json") public class TranscriptWSServer extends GenericRestWSServer
assembly, cellBaseConfiguration, count, dbAdaptorFactory, exclude, httpServletRequest, include, initialized, jsonObjectMapper, jsonObjectWriter, limit, logger, monitor, outputFormat, params, query, queryOptions, SERVICE_START_DATE, skip, skipCount, sort, species, startTime, uriInfo, version, WATCH
Constructor and Description |
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TranscriptWSServer(String version,
String species,
String exclude,
javax.ws.rs.core.UriInfo uriInfo,
javax.servlet.http.HttpServletRequest hsr) |
Modifier and Type | Method and Description |
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javax.ws.rs.core.Response |
count(String region,
String biotype,
String xrefs) |
javax.ws.rs.core.Response |
defaultMethod() |
javax.ws.rs.core.Response |
first() |
javax.ws.rs.core.Response |
getAll() |
javax.ws.rs.core.Response |
getByEnsemblId(String id) |
javax.ws.rs.core.Response |
getGeneById(String id) |
javax.ws.rs.core.Response |
getModel() |
javax.ws.rs.core.Response |
getProtein(String transcriptId) |
javax.ws.rs.core.Response |
getProteinFunctionPredictionByTranscriptId(String id) |
javax.ws.rs.core.Response |
getSequencesByIdList(String id) |
javax.ws.rs.core.Response |
getVariationsByTranscriptId(String id) |
javax.ws.rs.core.Response |
help() |
javax.ws.rs.core.Response |
stats() |
createErrorResponse, createErrorResponse, createJsonResponse, createModelResponse, createOkResponse, createOkResponse, createOkResponse, createQueries, createStringResponse, generateResponse, generateResponse, logQuery, parseQueryParams
public TranscriptWSServer(@PathParam(value="version") String version, @PathParam(value="species") String species, @DefaultValue(value="") @QueryParam(value="exclude") String exclude, @Context javax.ws.rs.core.UriInfo uriInfo, @Context javax.servlet.http.HttpServletRequest hsr) throws VersionException, SpeciesException, IOException, CellbaseException
@GET @Path(value="/model") public javax.ws.rs.core.Response getModel()
@GET @Path(value="/first") public javax.ws.rs.core.Response first()
@GET @Path(value="/count") public javax.ws.rs.core.Response count(@DefaultValue(value="") @QueryParam(value="region") String region, @DefaultValue(value="") @QueryParam(value="biotype") String biotype, @DefaultValue(value="") @QueryParam(value="xrefs") String xrefs) throws Exception
Exception
@GET @Path(value="/stats") public javax.ws.rs.core.Response stats()
@GET @Path(value="/{transcriptId}/info") public javax.ws.rs.core.Response getByEnsemblId(@PathParam(value="transcriptId") String id)
@GET @Path(value="/{transcriptId}/gene") public javax.ws.rs.core.Response getGeneById(@PathParam(value="transcriptId") String id)
@GET @Path(value="/search") public javax.ws.rs.core.Response getAll()
@GET @Path(value="/{transcriptId}/variation") public javax.ws.rs.core.Response getVariationsByTranscriptId(@PathParam(value="transcriptId") String id)
@GET @Path(value="/{transcriptId}/sequence") public javax.ws.rs.core.Response getSequencesByIdList(@PathParam(value="transcriptId") String id)
@GET @Path(value="/{transcriptId}/protein") public javax.ws.rs.core.Response getProtein(@PathParam(value="transcriptId") String transcriptId)
@GET @Path(value="/{transcriptId}/function_prediction") public javax.ws.rs.core.Response getProteinFunctionPredictionByTranscriptId(@PathParam(value="transcriptId") String id)
@GET public javax.ws.rs.core.Response defaultMethod()
defaultMethod
in class GenericRestWSServer
@GET @Path(value="/help") public javax.ws.rs.core.Response help()
help
in interface IWSServer
help
in class GenericRestWSServer
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