org.opencb.cellbase.server.rest.clinical

Class ClinicalWSServer

java.lang.Object

org.opencb.cellbase.server.rest.GenericRestWSServer

org.opencb.cellbase.server.rest.clinical.ClinicalWSServer

All Implemented Interfaces:

IWSServer

@Path(value="/{version}/{species}/clinical")
 @Produces(value="application/json")
public class ClinicalWSServer
extends GenericRestWSServer

Created by fjlopez on 06/12/16.

Field Summary

Fields inherited from class org.opencb.cellbase.server.rest.GenericRestWSServer

assembly, cellBaseConfiguration, count, dbAdaptorFactory, exclude, httpServletRequest, include, initialized, jsonObjectMapper, jsonObjectWriter, limit, logger, monitor, outputFormat, params, query, queryOptions, SERVICE_START_DATE, skip, skipCount, sort, species, startTime, uriInfo, version, WATCH

Constructor Summary

Constructors

Constructor and Description
ClinicalWSServer(String version, String species, javax.ws.rs.core.UriInfo uriInfo, javax.servlet.http.HttpServletRequest hsr)

Method Summary

Modifier and Type	Method and Description
javax.ws.rs.core.Response	getAll()
javax.ws.rs.core.Response	getAlleleOriginLabels()
javax.ws.rs.core.Response	getClinicalSignificanceLabels()
javax.ws.rs.core.Response	getConsistencyLabels()
javax.ws.rs.core.Response	getModeInheritanceLabels()
javax.ws.rs.core.Response	getVariantTypes()

Methods inherited from class org.opencb.cellbase.server.rest.GenericRestWSServer

createErrorResponse, createErrorResponse, createJsonResponse, createModelResponse, createOkResponse, createOkResponse, createOkResponse, createQueries, createStringResponse, defaultMethod, generateResponse, generateResponse, help, logQuery, parseQueryParams

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.opencb.cellbase.server.rest.IWSServer

count, first, stats

Constructor Detail

ClinicalWSServer

public ClinicalWSServer(@PathParam(value="version")
                        String version,
                        @PathParam(value="species")
                        String species,
                        @Context
                        javax.ws.rs.core.UriInfo uriInfo,
                        @Context
                        javax.servlet.http.HttpServletRequest hsr)
                 throws VersionException,
                        SpeciesException,
                        IOException,
                        CellbaseException

Throws:

VersionException

SpeciesException

IOException

CellbaseException

Method Detail

getAll

@GET
 @Path(value="/variant/search")
public javax.ws.rs.core.Response getAll()

getAlleleOriginLabels

@GET
 @Path(value="/variant/allele_origin_labels")
public javax.ws.rs.core.Response getAlleleOriginLabels()

getModeInheritanceLabels

@GET
 @Path(value="/variant/mode_inheritance_labels")
public javax.ws.rs.core.Response getModeInheritanceLabels()

getClinicalSignificanceLabels

@GET
 @Path(value="/variant/clinsig_labels")
public javax.ws.rs.core.Response getClinicalSignificanceLabels()

getConsistencyLabels

@GET
 @Path(value="/variant/consistency_labels")
public javax.ws.rs.core.Response getConsistencyLabels()

getVariantTypes

@GET
 @Path(value="/variant/type")
public javax.ws.rs.core.Response getVariantTypes()