org.opencb.cellbase.core.common.clinical

Class ClinicalVariant

java.lang.Object

org.opencb.cellbase.core.common.clinical.ClinicalVariant

Direct Known Subclasses:

ClinvarPublicSet, Cosmic, Gwas

public abstract class ClinicalVariant
extends Object

Created by pol on 20/08/15.

Constructor Summary

Constructors

Constructor and Description
ClinicalVariant(String source)
ClinicalVariant(String chromosome, int start, int end, String reference, String alternate, String source)

Method Summary

Modifier and Type	Method and Description
String	getAlternate()
String	getChromosome()
int	getEnd()
String	getReference()
String	getSource()
int	getStart()
void	setAlternate(String alternate)
void	setChromosome(String chromosome)
void	setEnd(int end)
void	setReference(String reference)
void	setSource(String source)
void	setStart(int start)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ClinicalVariant

public ClinicalVariant(String source)

ClinicalVariant

public ClinicalVariant(String chromosome,
                       int start,
                       int end,
                       String reference,
                       String alternate,
                       String source)

Method Detail

getChromosome

public String getChromosome()

setChromosome

public void setChromosome(String chromosome)

getStart

public int getStart()

setStart

public void setStart(int start)

getEnd

public int getEnd()

setEnd

public void setEnd(int end)

getReference

public String getReference()

setReference

public void setReference(String reference)

getAlternate

public String getAlternate()

setAlternate

public void setAlternate(String alternate)

getSource

public String getSource()

setSource

public void setSource(String source)