public class VariationClient extends FeatureClient<org.opencb.biodata.models.variant.Variant>
assembly, category, clazz, client, configuration, DEFAULT_NUM_THREADS, EMPTY_STRING, jsonObjectMapper, LIMIT, logger, META, REST, REST_CALL_BATCH_SIZE, species, subcategory, WEBSERVICES
Constructor and Description |
---|
VariationClient(String species,
String assembly,
ClientConfiguration configuration) |
Modifier and Type | Method and Description |
---|---|
CellBaseDataResponse<String> |
getAllConsequenceTypes(org.opencb.commons.datastore.core.Query query) |
CellBaseDataResponse<String> |
getConsequenceTypeById(String id,
org.opencb.commons.datastore.core.QueryOptions options) |
CellBaseDataResponse<String> |
getPhenotype(String id,
org.opencb.commons.datastore.core.QueryOptions options) |
CellBaseDataResponse<String> |
getPopulationFrequency(String id,
org.opencb.commons.datastore.core.QueryOptions options) |
CellBaseDataResponse<org.opencb.biodata.models.core.RegulatoryFeature> |
getRegulatory(String id,
org.opencb.commons.datastore.core.QueryOptions options) |
CellBaseDataResponse<String> |
getSequence(String id,
org.opencb.commons.datastore.core.QueryOptions options) |
CellBaseDataResponse<org.opencb.biodata.models.core.Xref> |
getXref(String id,
org.opencb.commons.datastore.core.QueryOptions options) |
group, groupCount, next, search
public VariationClient(String species, String assembly, ClientConfiguration configuration)
public CellBaseDataResponse<String> getAllConsequenceTypes(org.opencb.commons.datastore.core.Query query) throws IOException
IOException
public CellBaseDataResponse<String> getConsequenceTypeById(String id, org.opencb.commons.datastore.core.QueryOptions options) throws IOException
IOException
public CellBaseDataResponse<org.opencb.biodata.models.core.RegulatoryFeature> getRegulatory(String id, org.opencb.commons.datastore.core.QueryOptions options) throws IOException
IOException
public CellBaseDataResponse<String> getPhenotype(String id, org.opencb.commons.datastore.core.QueryOptions options) throws IOException
IOException
public CellBaseDataResponse<String> getSequence(String id, org.opencb.commons.datastore.core.QueryOptions options) throws IOException
IOException
public CellBaseDataResponse<String> getPopulationFrequency(String id, org.opencb.commons.datastore.core.QueryOptions options) throws IOException
IOException
public CellBaseDataResponse<org.opencb.biodata.models.core.Xref> getXref(String id, org.opencb.commons.datastore.core.QueryOptions options) throws IOException
IOException
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