org.opencb.cellbase.lib.model

Class ClinicalVariation

java.lang.Object

org.opencb.cellbase.lib.model.ClinicalVariation

Deprecated.

@Deprecated
public class ClinicalVariation
extends Object

Created by parce on 10/31/14.

Constructor Summary

Constructors

Constructor and Description
ClinicalVariation(ClinvarPublicSet clinvarSet) Deprecated.
ClinicalVariation(Cosmic cosmic) Deprecated.
ClinicalVariation(Gwas gwas) Deprecated.
ClinicalVariation(String chromosome, int start, int end, String reference, String alternate) Deprecated.

Method Summary

Modifier and Type	Method and Description
void	addClinvar(ClinvarPublicSet clinvar) Deprecated.
void	addCosmic(Cosmic cosmic) Deprecated.
void	addGwas(Gwas gwas) Deprecated.
String	getAlternate() Deprecated.
String	getChromosome() Deprecated.
List<ClinvarPublicSet>	getClinvarList() Deprecated.
List<Cosmic>	getCosmicList() Deprecated.
int	getEnd() Deprecated.
List<Gwas>	getGwasList() Deprecated.
String	getReference() Deprecated.
int	getStart() Deprecated.
String	getVariantString() Deprecated.
void	setAlternate(String alternate) Deprecated.
void	setChromosome(String chromosome) Deprecated.
void	setClinvarList(List<ClinvarPublicSet> clinvarList) Deprecated.
void	setCosmicList(List<Cosmic> cosmicList) Deprecated.
void	setEnd(int end) Deprecated.
void	setGwasList(List<Gwas> gwasList) Deprecated.
void	setReference(String reference) Deprecated.
void	setStart(int start) Deprecated.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ClinicalVariation

public ClinicalVariation(String chromosome,
                         int start,
                         int end,
                         String reference,
                         String alternate)

Deprecated.

ClinicalVariation

public ClinicalVariation(ClinvarPublicSet clinvarSet)

Deprecated.

ClinicalVariation

public ClinicalVariation(Cosmic cosmic)

Deprecated.

ClinicalVariation

public ClinicalVariation(Gwas gwas)

Deprecated.

Method Detail

getChromosome

public String getChromosome()

Deprecated.

setChromosome

public void setChromosome(String chromosome)

Deprecated.

getStart

public int getStart()

Deprecated.

setStart

public void setStart(int start)

Deprecated.

getEnd

public int getEnd()

Deprecated.

setEnd

public void setEnd(int end)

Deprecated.

getReference

public String getReference()

Deprecated.

setReference

public void setReference(String reference)

Deprecated.

getAlternate

public String getAlternate()

Deprecated.

setAlternate

public void setAlternate(String alternate)

Deprecated.

addClinvar

public void addClinvar(ClinvarPublicSet clinvar)

Deprecated.

addCosmic

public void addCosmic(Cosmic cosmic)

Deprecated.

addGwas

public void addGwas(Gwas gwas)

Deprecated.

getClinvarList

public List<ClinvarPublicSet> getClinvarList()

Deprecated.

setClinvarList

public void setClinvarList(List<ClinvarPublicSet> clinvarList)

Deprecated.

getCosmicList

public List<Cosmic> getCosmicList()

Deprecated.

setCosmicList

public void setCosmicList(List<Cosmic> cosmicList)

Deprecated.

getGwasList

public List<Gwas> getGwasList()

Deprecated.

setGwasList

public void setGwasList(List<Gwas> gwasList)

Deprecated.

getVariantString

public String getVariantString()

Deprecated.