org.opencb.cellbase.lib.loader

Class MongoDBCellBaseLoader

java.lang.Object

org.opencb.cellbase.core.loader.CellBaseLoader

org.opencb.cellbase.lib.loader.MongoDBCellBaseLoader

All Implemented Interfaces:

Callable<Integer>

Deprecated.

@Deprecated
public class MongoDBCellBaseLoader
extends CellBaseLoader

Created by parce on 18/02/15.

Field Summary

Fields inherited from class org.opencb.cellbase.core.loader.CellBaseLoader

blockingQueue, cellBaseConfiguration, data, database, field, innerFields, logger

Constructor Summary

Constructors

Constructor and Description
MongoDBCellBaseLoader(BlockingQueue<List<String>> queue, String data, String database) Deprecated.
MongoDBCellBaseLoader(BlockingQueue<List<String>> queue, String data, String database, String field, String[] innerFields, CellBaseConfiguration cellBaseConfiguration) Deprecated.

Method Summary

Modifier and Type	Method and Description
Integer	call() Deprecated.
void	close() Deprecated.
void	createIndex(String data) Deprecated.
void	init() Deprecated.
int	load(List<org.bson.Document> batch) Deprecated.
protected boolean	runCreateIndexProcess(Path indexFilePath) Deprecated.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MongoDBCellBaseLoader

public MongoDBCellBaseLoader(BlockingQueue<List<String>> queue,
                             String data,
                             String database)

Deprecated.

MongoDBCellBaseLoader

public MongoDBCellBaseLoader(BlockingQueue<List<String>> queue,
                             String data,
                             String database,
                             String field,
                             String[] innerFields,
                             CellBaseConfiguration cellBaseConfiguration)

Deprecated.

Method Detail

init

public void init()
          throws LoaderException

Deprecated.

Specified by:

init in class CellBaseLoader

Throws:

LoaderException

call

public Integer call()

Deprecated.

Specified by:

call in interface Callable<Integer>

Specified by:

call in class CellBaseLoader

createIndex

public void createIndex(String data)
                 throws LoaderException

Deprecated.

Specified by:

createIndex in class CellBaseLoader

Throws:

LoaderException

load

public int load(List<org.bson.Document> batch)

Deprecated.

close

public void close()

Deprecated.

Specified by:

close in class CellBaseLoader

runCreateIndexProcess

protected boolean runCreateIndexProcess(Path indexFilePath)
                                 throws IOException,
                                        InterruptedException

Deprecated.

Throws:

IOException

InterruptedException