public interface VariantDBAdaptor<T> extends FeatureDBAdaptor<T>
Modifier and Type | Interface and Description |
---|---|
static class |
VariantDBAdaptor.QueryParams |
MERGE, REGION
Modifier and Type | Method and Description |
---|---|
default List<CellBaseDataResult<T>> |
getByVariant(List<org.opencb.biodata.models.variant.Variant> variants,
org.opencb.commons.datastore.core.QueryOptions options) |
default CellBaseDataResult<T> |
getByVariant(org.opencb.biodata.models.variant.Variant variant,
org.opencb.commons.datastore.core.QueryOptions options) |
CellBaseDataResult<String> |
getConsequenceTypes(org.opencb.commons.datastore.core.Query query) |
default List<CellBaseDataResult<org.opencb.biodata.models.variant.avro.Score>> |
getFunctionalScoreVariant(List<org.opencb.biodata.models.variant.Variant> variants,
org.opencb.commons.datastore.core.QueryOptions options) |
CellBaseDataResult<org.opencb.biodata.models.variant.avro.Score> |
getFunctionalScoreVariant(org.opencb.biodata.models.variant.Variant variant,
org.opencb.commons.datastore.core.QueryOptions options) |
List<CellBaseDataResult<org.opencb.biodata.models.variant.Variant>> |
getPopulationFrequencyByVariant(List<org.opencb.biodata.models.variant.Variant> variants,
org.opencb.commons.datastore.core.QueryOptions queryOptions) |
CellBaseDataResult |
startsWith(String id,
org.opencb.commons.datastore.core.QueryOptions options) |
first, first, getByRegion, getByRegion, getIntervalFrequencies, getIntervalFrequencies, nativeNext, next
count, count, distinct, distinct, forEach, forEach, get, get, groupBy, groupBy, iterator, iterator, nativeGet, nativeGet, nativeIterator, nativeIterator, rank, stats, stats, update
spliterator
CellBaseDataResult startsWith(String id, org.opencb.commons.datastore.core.QueryOptions options)
default CellBaseDataResult<T> getByVariant(org.opencb.biodata.models.variant.Variant variant, org.opencb.commons.datastore.core.QueryOptions options)
getByVariant
in interface FeatureDBAdaptor<T>
default List<CellBaseDataResult<T>> getByVariant(List<org.opencb.biodata.models.variant.Variant> variants, org.opencb.commons.datastore.core.QueryOptions options)
getByVariant
in interface FeatureDBAdaptor<T>
CellBaseDataResult<String> getConsequenceTypes(org.opencb.commons.datastore.core.Query query)
CellBaseDataResult<org.opencb.biodata.models.variant.avro.Score> getFunctionalScoreVariant(org.opencb.biodata.models.variant.Variant variant, org.opencb.commons.datastore.core.QueryOptions options)
default List<CellBaseDataResult<org.opencb.biodata.models.variant.avro.Score>> getFunctionalScoreVariant(List<org.opencb.biodata.models.variant.Variant> variants, org.opencb.commons.datastore.core.QueryOptions options)
List<CellBaseDataResult<org.opencb.biodata.models.variant.Variant>> getPopulationFrequencyByVariant(List<org.opencb.biodata.models.variant.Variant> variants, org.opencb.commons.datastore.core.QueryOptions queryOptions)
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