public class GenomicRegionClient extends ParentRestClient<org.opencb.biodata.models.core.GenomeSequenceFeature>
assembly, category, clazz, client, configuration, DEFAULT_NUM_THREADS, EMPTY_STRING, jsonObjectMapper, LIMIT, logger, META, REST, REST_CALL_BATCH_SIZE, species, subcategory, WEBSERVICES
Constructor and Description |
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GenomicRegionClient(String species,
String assembly,
ClientConfiguration clientConfiguration) |
Modifier and Type | Method and Description |
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CellBaseDataResponse<org.opencb.biodata.models.core.GenomicScoreRegion> |
getConservation(List<String> id,
org.opencb.commons.datastore.core.QueryOptions options) |
CellBaseDataResponse<org.opencb.biodata.models.core.Gene> |
getGene(List<String> id,
org.opencb.commons.datastore.core.QueryOptions options) |
CellBaseDataResponse<org.opencb.biodata.models.core.RegulatoryFeature> |
getRegulatory(List<String> id,
org.opencb.commons.datastore.core.QueryOptions options) |
CellBaseDataResponse<org.opencb.biodata.models.variant.avro.Repeat> |
getRepeat(List<String> id,
org.opencb.commons.datastore.core.QueryOptions options) |
CellBaseDataResponse<org.opencb.biodata.models.core.GenomeSequenceFeature> |
getSequence(List<String> id,
org.opencb.commons.datastore.core.QueryOptions options) |
CellBaseDataResponse<org.opencb.biodata.models.core.RegulatoryFeature> |
getTfbs(List<String> id,
org.opencb.commons.datastore.core.QueryOptions options) |
CellBaseDataResponse<org.opencb.biodata.models.core.Transcript> |
getTranscript(List<String> id,
org.opencb.commons.datastore.core.QueryOptions options) |
CellBaseDataResponse<org.opencb.biodata.models.variant.Variant> |
getVariation(List<String> id,
org.opencb.commons.datastore.core.QueryOptions options) |
public GenomicRegionClient(String species, String assembly, ClientConfiguration clientConfiguration)
public CellBaseDataResponse<org.opencb.biodata.models.core.Gene> getGene(List<String> id, org.opencb.commons.datastore.core.QueryOptions options) throws IOException
IOException
public CellBaseDataResponse<org.opencb.biodata.models.core.Transcript> getTranscript(List<String> id, org.opencb.commons.datastore.core.QueryOptions options) throws IOException
IOException
public CellBaseDataResponse<org.opencb.biodata.models.variant.avro.Repeat> getRepeat(List<String> id, org.opencb.commons.datastore.core.QueryOptions options) throws IOException
IOException
public CellBaseDataResponse<org.opencb.biodata.models.variant.Variant> getVariation(List<String> id, org.opencb.commons.datastore.core.QueryOptions options) throws IOException
IOException
public CellBaseDataResponse<org.opencb.biodata.models.core.GenomeSequenceFeature> getSequence(List<String> id, org.opencb.commons.datastore.core.QueryOptions options) throws IOException
IOException
public CellBaseDataResponse<org.opencb.biodata.models.core.RegulatoryFeature> getRegulatory(List<String> id, org.opencb.commons.datastore.core.QueryOptions options) throws IOException
IOException
public CellBaseDataResponse<org.opencb.biodata.models.core.RegulatoryFeature> getTfbs(List<String> id, org.opencb.commons.datastore.core.QueryOptions options) throws IOException
IOException
public CellBaseDataResponse<org.opencb.biodata.models.core.GenomicScoreRegion> getConservation(List<String> id, org.opencb.commons.datastore.core.QueryOptions options) throws IOException
IOException
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