public class GeneClient extends FeatureClient<org.opencb.biodata.models.core.Gene>
assembly, category, clazz, client, configuration, DEFAULT_NUM_THREADS, EMPTY_STRING, jsonObjectMapper, LIMIT, logger, META, REST, REST_CALL_BATCH_SIZE, species, subcategory, WEBSERVICES
Constructor and Description |
---|
GeneClient(String species,
String assembly,
ClientConfiguration clientConfiguration) |
Modifier and Type | Method and Description |
---|---|
CellBaseDataResponse<String> |
getBiotypes(org.opencb.commons.datastore.core.Query query) |
CellBaseDataResponse<org.opencb.biodata.formats.protein.uniprot.v201504jaxb.Entry> |
getProtein(String id,
org.opencb.commons.datastore.core.QueryOptions queryOptions) |
CellBaseDataResponse<org.opencb.biodata.models.core.TranscriptTfbs> |
getTfbs(String id,
org.opencb.commons.datastore.core.QueryOptions queryOptions) |
CellBaseDataResponse<org.opencb.biodata.models.core.Transcript> |
getTranscript(String id,
org.opencb.commons.datastore.core.QueryOptions queryOptions) |
CellBaseDataResponse<org.opencb.biodata.models.variant.Variant> |
getVariation(List<String> id,
org.opencb.commons.datastore.core.QueryOptions queryOptions) |
CellBaseDataResponse<org.opencb.biodata.models.core.Gene> |
list(org.opencb.commons.datastore.core.Query query)
Deprecated.
|
group, groupCount, next, search
public GeneClient(String species, String assembly, ClientConfiguration clientConfiguration)
public CellBaseDataResponse<String> getBiotypes(org.opencb.commons.datastore.core.Query query) throws IOException
IOException
@Deprecated public CellBaseDataResponse<org.opencb.biodata.models.core.Gene> list(org.opencb.commons.datastore.core.Query query) throws IOException
IOException
public CellBaseDataResponse<org.opencb.biodata.models.core.Transcript> getTranscript(String id, org.opencb.commons.datastore.core.QueryOptions queryOptions) throws IOException
IOException
public CellBaseDataResponse<org.opencb.biodata.models.core.TranscriptTfbs> getTfbs(String id, org.opencb.commons.datastore.core.QueryOptions queryOptions) throws IOException
IOException
public CellBaseDataResponse<org.opencb.biodata.models.variant.Variant> getVariation(List<String> id, org.opencb.commons.datastore.core.QueryOptions queryOptions) throws IOException
IOException
public CellBaseDataResponse<org.opencb.biodata.formats.protein.uniprot.v201504jaxb.Entry> getProtein(String id, org.opencb.commons.datastore.core.QueryOptions queryOptions) throws IOException
IOException
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