org.opencb.cellbase.server.rest.feature

Class ClinicalLegacyWSServer

java.lang.Object

org.opencb.cellbase.server.rest.GenericRestWSServer

org.opencb.cellbase.server.rest.feature.ClinicalLegacyWSServer

All Implemented Interfaces:

IWSServer

Deprecated.

@Path(value="/{version}/{species}/feature/clinical")
 @Produces(value="application/json")
 @Deprecated
public class ClinicalLegacyWSServer
extends GenericRestWSServer

Author:

imedina

Field Summary

Fields inherited from class org.opencb.cellbase.server.rest.GenericRestWSServer

assembly, cellBaseConfiguration, count, dbAdaptorFactory, exclude, httpServletRequest, include, initialized, jsonObjectMapper, jsonObjectWriter, limit, logger, monitor, outputFormat, params, query, queryOptions, SERVICE_START_DATE, skip, skipCount, sort, species, startTime, uriInfo, version, WATCH

Constructor Summary

Constructors

Constructor and Description
ClinicalLegacyWSServer(String version, String species, javax.ws.rs.core.UriInfo uriInfo, javax.servlet.http.HttpServletRequest hsr) Deprecated.

Method Summary

Modifier and Type	Method and Description
javax.ws.rs.core.Response	getAll() Deprecated.
javax.ws.rs.core.Response	getAllClinicalSignificances() Deprecated.
javax.ws.rs.core.Response	getPhenotypeGeneRelations() Deprecated.
javax.ws.rs.core.Response	groupBy(String fields) Deprecated.

Methods inherited from class org.opencb.cellbase.server.rest.GenericRestWSServer

createErrorResponse, createErrorResponse, createJsonResponse, createModelResponse, createOkResponse, createOkResponse, createOkResponse, createQueries, createStringResponse, defaultMethod, generateResponse, generateResponse, help, logQuery, parseQueryParams

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.opencb.cellbase.server.rest.IWSServer

count, first, stats

Constructor Detail

ClinicalLegacyWSServer

public ClinicalLegacyWSServer(@PathParam(value="version")
                              String version,
                              @PathParam(value="species")
                              String species,
                              @Context
                              javax.ws.rs.core.UriInfo uriInfo,
                              @Context
                              javax.servlet.http.HttpServletRequest hsr)
                       throws VersionException,
                              SpeciesException,
                              IOException,
                              CellbaseException

Deprecated.

Throws:

VersionException

SpeciesException

IOException

CellbaseException

Method Detail

getAll

@GET
 @Path(value="/search")
public javax.ws.rs.core.Response getAll()

Deprecated.

groupBy

@GET
 @Path(value="/group")
public javax.ws.rs.core.Response groupBy(@DefaultValue(value="") @QueryParam(value="fields")
                                                                     String fields)

Deprecated.

getPhenotypeGeneRelations

@GET
 @Path(value="/phenotype-gene")
public javax.ws.rs.core.Response getPhenotypeGeneRelations()

Deprecated.

getAllClinicalSignificances

@GET
 @Path(value="/clinvar-significance")
public javax.ws.rs.core.Response getAllClinicalSignificances()

Deprecated.