public class VariationDataReader extends Object implements org.opencb.commons.io.DataReader<org.opencb.biodata.models.variant.Variant>
Constructor and Description |
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VariationDataReader(VariantDBAdaptor dbAdaptor,
org.opencb.commons.datastore.core.Query query,
org.opencb.commons.datastore.core.QueryOptions options) |
Modifier and Type | Method and Description |
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boolean |
close() |
boolean |
open() |
boolean |
post() |
boolean |
pre() |
List<org.opencb.biodata.models.variant.Variant> |
read()
Performs one read of from a CellBase variation collection.
|
List<org.opencb.biodata.models.variant.Variant> |
read(int batchSize) |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
forEach, spliterator
public VariationDataReader(VariantDBAdaptor dbAdaptor, org.opencb.commons.datastore.core.Query query, org.opencb.commons.datastore.core.QueryOptions options)
public boolean open()
open
in interface org.opencb.commons.io.DataReader<org.opencb.biodata.models.variant.Variant>
public boolean pre()
pre
in interface org.opencb.commons.io.DataReader<org.opencb.biodata.models.variant.Variant>
public List<org.opencb.biodata.models.variant.Variant> read()
read
in interface org.opencb.commons.io.DataReader<org.opencb.biodata.models.variant.Variant>
public List<org.opencb.biodata.models.variant.Variant> read(int batchSize)
read
in interface org.opencb.commons.io.DataReader<org.opencb.biodata.models.variant.Variant>
public boolean post()
post
in interface org.opencb.commons.io.DataReader<org.opencb.biodata.models.variant.Variant>
public boolean close()
close
in interface org.opencb.commons.io.DataReader<org.opencb.biodata.models.variant.Variant>
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