org.opencb.cellbase.server.rest.network

Class ProteinProteinInteractionWSServer

java.lang.Object

org.opencb.cellbase.server.rest.GenericRestWSServer

org.opencb.cellbase.server.rest.network.ProteinProteinInteractionWSServer

All Implemented Interfaces:

IWSServer

@Path(value="/{version}/{species}/network/protein")
 @Produces(value="application/json")
public class ProteinProteinInteractionWSServer
extends GenericRestWSServer

Created with IntelliJ IDEA. User: mbleda Date: 12/5/13 Time: 5:08 PM To change this template use File | Settings | File Templates.

Field Summary

Fields inherited from class org.opencb.cellbase.server.rest.GenericRestWSServer

assembly, cellBaseConfiguration, count, dbAdaptorFactory, exclude, httpServletRequest, include, initialized, jsonObjectMapper, jsonObjectWriter, limit, logger, monitor, outputFormat, params, query, queryOptions, SERVICE_START_DATE, skip, skipCount, sort, species, startTime, uriInfo, version, WATCH

Constructor Summary

Constructors

Constructor and Description
ProteinProteinInteractionWSServer(String version, String species, javax.ws.rs.core.UriInfo uriInfo, javax.servlet.http.HttpServletRequest hsr)

Method Summary

Modifier and Type	Method and Description
javax.ws.rs.core.Response	getAllPPI(String interactor, String type, String database, String status, String detectionMethod)
javax.ws.rs.core.Response	getInteractorsByInteractionId(String interaction, String include)
javax.ws.rs.core.Response	getModel()
javax.ws.rs.core.Response	getPPIByInteractionId(String interaction)

Methods inherited from class org.opencb.cellbase.server.rest.GenericRestWSServer

createErrorResponse, createErrorResponse, createJsonResponse, createModelResponse, createOkResponse, createOkResponse, createOkResponse, createQueries, createStringResponse, defaultMethod, generateResponse, generateResponse, help, logQuery, parseQueryParams

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.opencb.cellbase.server.rest.IWSServer

count, first, stats

Constructor Detail

ProteinProteinInteractionWSServer

public ProteinProteinInteractionWSServer(@PathParam(value="version")
                                         String version,
                                         @PathParam(value="species")
                                         String species,
                                         @Context
                                         javax.ws.rs.core.UriInfo uriInfo,
                                         @Context
                                         javax.servlet.http.HttpServletRequest hsr)
                                  throws VersionException,
                                         SpeciesException,
                                         IOException,
                                         CellbaseException

Throws:

VersionException

SpeciesException

IOException

CellbaseException

Method Detail

getModel

@GET
 @Path(value="/model")
public javax.ws.rs.core.Response getModel()

getAllPPI

@GET
 @Path(value="/all")
public javax.ws.rs.core.Response getAllPPI(@DefaultValue(value="") @QueryParam(value="interactor")
                                                                     String interactor,
                                                                     @DefaultValue(value="") @QueryParam(value="type")
                                                                     String type,
                                                                     @DefaultValue(value="") @QueryParam(value="database")
                                                                     String database,
                                                                     @DefaultValue(value="") @QueryParam(value="status")
                                                                     String status,
                                                                     @DefaultValue(value="") @QueryParam(value="detectionMethod")
                                                                     String detectionMethod)

getPPIByInteractionId

@GET
 @Path(value="/{interaction}/info")
public javax.ws.rs.core.Response getPPIByInteractionId(@PathParam(value="interaction")
                                                                                                String interaction)

getInteractorsByInteractionId

@GET
 @Path(value="/{interaction}/interactors")
public javax.ws.rs.core.Response getInteractorsByInteractionId(@PathParam(value="interaction")
                                                                                                               String interaction,
                                                                                                               @DefaultValue(value="interactorA,interactorB") @QueryParam(value="include")
                                                                                                               String include)