public interface ProteinDBAdaptor<T> extends CellBaseDBAdaptor<T>
Modifier and Type | Interface and Description |
---|---|
static class |
ProteinDBAdaptor.QueryParams |
Modifier and Type | Method and Description |
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CellBaseDataResult<org.opencb.biodata.models.variant.avro.Score> |
getSubstitutionScores(org.opencb.commons.datastore.core.Query query,
org.opencb.commons.datastore.core.QueryOptions options) |
CellBaseDataResult<org.opencb.biodata.models.variant.avro.ProteinVariantAnnotation> |
getVariantAnnotation(String enstranscriptId,
int position,
String aaReference,
String aaAlternate,
org.opencb.commons.datastore.core.QueryOptions options) |
count, count, distinct, distinct, forEach, forEach, get, get, groupBy, groupBy, iterator, iterator, nativeGet, nativeGet, nativeIterator, nativeIterator, rank, stats, stats, update
spliterator
CellBaseDataResult<org.opencb.biodata.models.variant.avro.Score> getSubstitutionScores(org.opencb.commons.datastore.core.Query query, org.opencb.commons.datastore.core.QueryOptions options)
CellBaseDataResult<org.opencb.biodata.models.variant.avro.ProteinVariantAnnotation> getVariantAnnotation(String enstranscriptId, int position, String aaReference, String aaAlternate, org.opencb.commons.datastore.core.QueryOptions options)
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