public class CustomAnnotationVariantIndexer extends VariantIndexer
dbIndex, jsonObjectMapper, jsonObjectWriter
Constructor and Description |
---|
CustomAnnotationVariantIndexer(org.opencb.biodata.formats.variant.io.VariantReader variantReader,
int maxOpenFiles,
boolean forceCreate,
List<String> fieldList) |
CustomAnnotationVariantIndexer(org.opencb.biodata.formats.variant.io.VariantReader variantReader,
int maxOpenFiles,
List<String> fields) |
Modifier and Type | Method and Description |
---|---|
protected void |
updateIndex(List<org.opencb.biodata.models.variant.Variant> variantList) |
close, getDbIndex, getDbLocation, open, run
public CustomAnnotationVariantIndexer(org.opencb.biodata.formats.variant.io.VariantReader variantReader, int maxOpenFiles, List<String> fields)
protected void updateIndex(List<org.opencb.biodata.models.variant.Variant> variantList) throws IOException, org.rocksdb.RocksDBException
updateIndex
in class VariantIndexer
IOException
org.rocksdb.RocksDBException
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