public class VariantAnnotationCommandExecutor extends CommandExecutor
Modifier and Type | Class and Description |
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static class |
VariantAnnotationCommandExecutor.FileFormat |
appHome, clientConfiguration, conf, configFile, configuration, logger, logLevel, verbose
Constructor and Description |
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VariantAnnotationCommandExecutor(CellBaseCliOptionsParser.VariantAnnotationCommandOptions variantAnnotationCommandOptions) |
Modifier and Type | Method and Description |
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void |
execute() |
getConfigFile, getLogger, getLogLevel, isVerbose, loadCellBaseConfiguration, loadClientConfiguration, makeDir, setConfigFile, setLogLevel, setVerbose
public VariantAnnotationCommandExecutor(CellBaseCliOptionsParser.VariantAnnotationCommandOptions variantAnnotationCommandOptions)
public void execute()
execute
in class CommandExecutor
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