@Deprecated public interface VariantAnnotationDBAdaptor<T> extends CellBaseDBAdaptor<T>
Modifier and Type | Method and Description |
---|---|
CellBaseDataResult<T> |
getAnnotationByVariant(org.opencb.biodata.models.variant.Variant variant,
org.opencb.commons.datastore.core.QueryOptions options)
Deprecated.
|
List<CellBaseDataResult<T>> |
getAnnotationByVariantList(List<org.opencb.biodata.models.variant.Variant> variants,
org.opencb.commons.datastore.core.QueryOptions options)
Deprecated.
|
CellBaseDataResult<org.opencb.biodata.models.variant.avro.ConsequenceType> |
getConsequenceTypes(org.opencb.commons.datastore.core.Query query,
org.opencb.commons.datastore.core.QueryOptions options)
Deprecated.
|
List<CellBaseDataResult<org.opencb.biodata.models.variant.avro.Score>> |
getFunctionalScore(List<org.opencb.biodata.models.variant.Variant> variants,
org.opencb.commons.datastore.core.QueryOptions options)
Deprecated.
|
CellBaseDataResult<org.opencb.biodata.models.variant.avro.Score> |
getFunctionalScore(org.opencb.commons.datastore.core.Query query,
org.opencb.commons.datastore.core.QueryOptions options)
Deprecated.
|
CellBaseDataResult<org.opencb.biodata.models.variant.avro.Score> |
getFunctionalScore(org.opencb.biodata.models.variant.Variant variant,
org.opencb.commons.datastore.core.QueryOptions options)
Deprecated.
|
count, count, distinct, distinct, forEach, forEach, get, get, groupBy, groupBy, iterator, iterator, nativeGet, nativeGet, nativeIterator, nativeIterator, rank, stats, stats, update
spliterator
CellBaseDataResult<T> getAnnotationByVariant(org.opencb.biodata.models.variant.Variant variant, org.opencb.commons.datastore.core.QueryOptions options)
List<CellBaseDataResult<T>> getAnnotationByVariantList(List<org.opencb.biodata.models.variant.Variant> variants, org.opencb.commons.datastore.core.QueryOptions options)
CellBaseDataResult<org.opencb.biodata.models.variant.avro.ConsequenceType> getConsequenceTypes(org.opencb.commons.datastore.core.Query query, org.opencb.commons.datastore.core.QueryOptions options)
CellBaseDataResult<org.opencb.biodata.models.variant.avro.Score> getFunctionalScore(org.opencb.biodata.models.variant.Variant variant, org.opencb.commons.datastore.core.QueryOptions options)
List<CellBaseDataResult<org.opencb.biodata.models.variant.avro.Score>> getFunctionalScore(List<org.opencb.biodata.models.variant.Variant> variants, org.opencb.commons.datastore.core.QueryOptions options)
CellBaseDataResult<org.opencb.biodata.models.variant.avro.Score> getFunctionalScore(org.opencb.commons.datastore.core.Query query, org.opencb.commons.datastore.core.QueryOptions options)
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