public class VariationFile extends AbstractVariationFile
Modifier and Type | Field and Description |
---|---|
static String |
PREPROCESSED_VARIATION_FILENAME |
static int |
RS_COLUMN_INDEX |
static String |
VARIATION_FILENAME |
static int |
VARIATION_ID_COLUMN_INDEX |
fileReader, logger, preprocessedFileName, unprocessedFileName, variationDirectory, variationIdColumnIndex
Constructor and Description |
---|
VariationFile(Path variationDirectory) |
Modifier and Type | Method and Description |
---|---|
BufferedReader |
getBufferedReader() |
createBufferedReader, existsZippedOrUnzippedFile, existsZippedOrUnzippedFile, getBufferedReader, getUnprocessedFileBufferedReader, getVariationRelatedLines, gunzip, gzip, isEmpty, sort, sortFileByNumericColumn
public static final String VARIATION_FILENAME
public static final String PREPROCESSED_VARIATION_FILENAME
public static final int VARIATION_ID_COLUMN_INDEX
public static final int RS_COLUMN_INDEX
public VariationFile(Path variationDirectory)
public BufferedReader getBufferedReader() throws IOException
IOException
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