public class VariantAnnotationCalculator extends Object
Constructor and Description |
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VariantAnnotationCalculator(String species,
String assembly,
DBAdaptorFactory dbAdaptorFactory) |
Modifier and Type | Method and Description |
---|---|
CellBaseDataResult |
getAllConsequenceTypesByVariant(org.opencb.biodata.models.variant.Variant variant,
org.opencb.commons.datastore.core.QueryOptions queryOptions)
Deprecated.
|
CellBaseDataResult |
getAnnotationByVariant(org.opencb.biodata.models.variant.Variant variant,
org.opencb.commons.datastore.core.QueryOptions queryOptions) |
List<CellBaseDataResult<org.opencb.biodata.models.variant.avro.VariantAnnotation>> |
getAnnotationByVariantList(List<org.opencb.biodata.models.variant.Variant> variantList,
org.opencb.commons.datastore.core.QueryOptions queryOptions) |
public VariantAnnotationCalculator(String species, String assembly, DBAdaptorFactory dbAdaptorFactory)
@Deprecated public CellBaseDataResult getAllConsequenceTypesByVariant(org.opencb.biodata.models.variant.Variant variant, org.opencb.commons.datastore.core.QueryOptions queryOptions)
public CellBaseDataResult getAnnotationByVariant(org.opencb.biodata.models.variant.Variant variant, org.opencb.commons.datastore.core.QueryOptions queryOptions) throws InterruptedException, ExecutionException
public List<CellBaseDataResult<org.opencb.biodata.models.variant.avro.VariantAnnotation>> getAnnotationByVariantList(List<org.opencb.biodata.models.variant.Variant> variantList, org.opencb.commons.datastore.core.QueryOptions queryOptions) throws InterruptedException, ExecutionException
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