org.opencb.cellbase.server.rest.regulatory

Class TfWSServer

java.lang.Object

org.opencb.cellbase.server.rest.GenericRestWSServer

org.opencb.cellbase.server.rest.regulatory.RegulatoryWSServer

org.opencb.cellbase.server.rest.regulatory.TfWSServer

All Implemented Interfaces:

IWSServer

@Path(value="/{version}/{species}/regulation/tf")
 @Produces(value="application/json")
public class TfWSServer
extends RegulatoryWSServer

Field Summary

Fields inherited from class org.opencb.cellbase.server.rest.GenericRestWSServer

assembly, cellBaseConfiguration, count, dbAdaptorFactory, exclude, httpServletRequest, include, initialized, jsonObjectMapper, jsonObjectWriter, limit, logger, monitor, outputFormat, params, query, queryOptions, SERVICE_START_DATE, skip, skipCount, sort, species, startTime, uriInfo, version, WATCH

Constructor Summary

Constructors

Constructor and Description
TfWSServer(String version, String species, javax.ws.rs.core.UriInfo uriInfo, javax.servlet.http.HttpServletRequest hsr)

Method Summary

Modifier and Type	Method and Description
javax.ws.rs.core.Response	defaultMethod()
javax.ws.rs.core.Response	getAllByTfbs(String tfId, String celltype)
javax.ws.rs.core.Response	getEnsemblGenes(String tfId)
javax.ws.rs.core.Response	help()

Methods inherited from class org.opencb.cellbase.server.rest.regulatory.RegulatoryWSServer

getAll, getFeatureClasses, getFeatureTypes

Methods inherited from class org.opencb.cellbase.server.rest.GenericRestWSServer

createErrorResponse, createErrorResponse, createJsonResponse, createModelResponse, createOkResponse, createOkResponse, createOkResponse, createQueries, createStringResponse, generateResponse, generateResponse, logQuery, parseQueryParams

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.opencb.cellbase.server.rest.IWSServer

count, first, stats

Constructor Detail

TfWSServer

public TfWSServer(@PathParam(value="version")
                  String version,
                  @PathParam(value="species")
                  String species,
                  @Context
                  javax.ws.rs.core.UriInfo uriInfo,
                  @Context
                  javax.servlet.http.HttpServletRequest hsr)
           throws VersionException,
                  SpeciesException,
                  IOException,
                  CellbaseException

Throws:

VersionException

SpeciesException

IOException

CellbaseException

Method Detail

getAllByTfbs

@GET
 @Path(value="/{tfId}/tfbs")
public javax.ws.rs.core.Response getAllByTfbs(@PathParam(value="tfId")
                                                                                String tfId,
                                                                                @DefaultValue(value="") @QueryParam(value="celltype")
                                                                                String celltype)

getEnsemblGenes

@GET
 @Path(value="/{tfId}/gene")
public javax.ws.rs.core.Response getEnsemblGenes(@PathParam(value="tfId")
                                                                                   String tfId)

defaultMethod

@GET
public javax.ws.rs.core.Response defaultMethod()

Overrides:

defaultMethod in class GenericRestWSServer

help

@GET
 @Path(value="/help")
public javax.ws.rs.core.Response help()

Specified by:

help in interface IWSServer

Overrides:

help in class GenericRestWSServer