org.opencb.cellbase.core.common

Class DNASequenceUtils

java.lang.Object

org.opencb.cellbase.core.common.DNASequenceUtils

public class DNASequenceUtils
extends Object

Field Summary

Fields

Modifier and Type	Field and Description
static Map<String,String>	CODON_TO_AMINOACID
static Map<String,String>	CODON_TO_AMINOACID_SHORT
static Map<Character,Character>	COMPLEMENT

Constructor Summary

Constructors

Constructor and Description
DNASequenceUtils()

Method Summary

Modifier and Type	Method and Description
static String	reverseComplement(String dnaSequence)
static String	translate(String dnaSequence)
static String	translate(String dnaSequence, String separator)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

COMPLEMENT

public static final Map<Character,Character> COMPLEMENT

CODON_TO_AMINOACID

public static final Map<String,String> CODON_TO_AMINOACID

CODON_TO_AMINOACID_SHORT

public static final Map<String,String> CODON_TO_AMINOACID_SHORT

Constructor Detail

DNASequenceUtils

public DNASequenceUtils()

Method Detail

translate

public static String translate(String dnaSequence)

translate

public static String translate(String dnaSequence,
                               String separator)

reverseComplement

public static String reverseComplement(String dnaSequence)