public class VcfVariantAnnotator extends Object implements VariantAnnotator
IGNORE_PHASE
Constructor and Description |
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VcfVariantAnnotator(String fileName,
org.rocksdb.RocksDB dbIndex,
String fileId,
org.opencb.commons.datastore.core.QueryOptions queryOptions) |
Modifier and Type | Method and Description |
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boolean |
close() |
boolean |
open() |
void |
run(List<org.opencb.biodata.models.variant.Variant> variantList)
Updates VariantAnnotation objects in variantAnnotationList.
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public boolean open()
open
in interface VariantAnnotator
public void run(List<org.opencb.biodata.models.variant.Variant> variantList)
run
in interface VariantAnnotator
variantList
- List of Variant objects. variantList and variantAnnotationList must contain variants in the
SAME order: variantAnnotation at position i must correspond to variant ipublic boolean close()
close
in interface VariantAnnotator
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