public class VariationFeatureFile extends AbstractVariationFile
Modifier and Type | Field and Description |
---|---|
static String |
PREPROCESSED_VARIATION_FEATURE_FILENAME |
static String |
VARIATION_FEATURE_FILENAME |
static int |
VARIATION_ID_COLUMN_INDEX_IN_VARIATION_FEATURE_FILE |
fileReader, logger, preprocessedFileName, unprocessedFileName, variationDirectory, variationIdColumnIndex
Constructor and Description |
---|
VariationFeatureFile(Path variationDirectory) |
createBufferedReader, existsZippedOrUnzippedFile, existsZippedOrUnzippedFile, getBufferedReader, getUnprocessedFileBufferedReader, getVariationRelatedLines, gunzip, gzip, isEmpty, sort, sortFileByNumericColumn
public static final String VARIATION_FEATURE_FILENAME
public static final String PREPROCESSED_VARIATION_FEATURE_FILENAME
public static final int VARIATION_ID_COLUMN_INDEX_IN_VARIATION_FEATURE_FILE
public VariationFeatureFile(Path variationDirectory)
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