public class CellBaseCliOptionsParser extends CliOptionsParser
Modifier and Type | Class and Description |
---|---|
class |
CellBaseCliOptionsParser.QueryCommandOptions |
class |
CellBaseCliOptionsParser.VariantAnnotationCommandOptions |
CliOptionsParser.CommonCommandOptions, CliOptionsParser.GeneralOptions, CliOptionsParser.SpeciesAndAssemblyCommandOptions
ANSI_BLACK, ANSI_BLUE, ANSI_CYAN, ANSI_GREEN, ANSI_PURPLE, ANSI_RED, ANSI_RESET, ANSI_WHITE, ANSI_YELLOW, generalOptions, jCommander
Constructor and Description |
---|
CellBaseCliOptionsParser() |
Modifier and Type | Method and Description |
---|---|
CliOptionsParser.CommonCommandOptions |
getCommonCommandOptions() |
CellBaseCliOptionsParser.QueryCommandOptions |
getQueryCommandOptions() |
CellBaseCliOptionsParser.VariantAnnotationCommandOptions |
getVariantAnnotationCommandOptions() |
boolean |
isHelp() |
void |
parse(String[] args) |
getAPIVersion, getCommand, getGeneralOptions, getJCommander, getSubCommand, getSubCommand, printCommands, printMainUsage, printUsage, printVersion
public void parse(String[] args) throws com.beust.jcommander.ParameterException
parse
in class CliOptionsParser
com.beust.jcommander.ParameterException
public boolean isHelp()
isHelp
in class CliOptionsParser
public CliOptionsParser.CommonCommandOptions getCommonCommandOptions()
public CellBaseCliOptionsParser.QueryCommandOptions getQueryCommandOptions()
public CellBaseCliOptionsParser.VariantAnnotationCommandOptions getVariantAnnotationCommandOptions()
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