public class CellBaseCliOptionsParser.VariantAnnotationCommandOptions extends Object
Modifier and Type | Field and Description |
---|---|
String |
assembly |
int |
batchSize |
boolean |
benchmark |
Map<String,String> |
buildParams |
boolean |
cellBaseAnnotation |
String |
chromosomeList |
CliOptionsParser.CommonCommandOptions |
commonOptions |
String |
customFileFields |
String |
customFileIds |
String |
customFiles |
String |
exclude |
boolean |
gzip |
Boolean |
ignorePhase |
String |
include |
String |
input |
boolean |
local |
int |
maxOpenFiles |
boolean |
noImprecision |
int |
numThreads |
String |
output |
String |
outputFormat |
Boolean |
phased
Deprecated.
|
String |
referenceFasta |
boolean |
resume |
boolean |
skipDecompose |
boolean |
skipLeftAlign |
boolean |
skipNormalize |
String |
species |
String |
url |
String |
variant |
Constructor and Description |
---|
VariantAnnotationCommandOptions() |
public CliOptionsParser.CommonCommandOptions commonOptions
public String input
public String variant
public String output
public String species
public String assembly
public boolean local
public String url
public String include
public String exclude
public int numThreads
public int batchSize
public boolean resume
public String customFiles
public String customFileIds
public String customFileFields
public int maxOpenFiles
public String outputFormat
public boolean gzip
public boolean cellBaseAnnotation
public String chromosomeList
public boolean benchmark
public String referenceFasta
public boolean skipNormalize
public boolean skipDecompose
public boolean skipLeftAlign
@Deprecated public Boolean phased
public Boolean ignorePhase
public boolean noImprecision
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