Package | Description |
---|---|
org.opencb.cellbase.core.api | |
org.opencb.cellbase.lib.impl |
Modifier and Type | Interface and Description |
---|---|
interface |
ClinicalDBAdaptor<T>
Created by imedina on 30/11/15.
|
interface |
ConservationDBAdaptor<T>
Deprecated.
|
interface |
FeatureDBAdaptor<T>
Created by imedina on 25/11/15.
|
interface |
GeneDBAdaptor<T>
Created by imedina on 25/11/15.
|
interface |
GenomeDBAdaptor
Created by imedina on 30/11/15.
|
interface |
PathwayDBAdaptor<T>
Created by imedina on 09/02/16.
|
interface |
ProteinDBAdaptor<T>
Created by imedina on 30/11/15.
|
interface |
ProteinProteinInteractionDBAdaptor<PPI>
Created by imedina on 13/12/15.
|
interface |
RegulationDBAdaptor<T>
Created by imedina on 07/12/15.
|
interface |
RepeatsDBAdaptor<T>
Created by fjlopez on 10/05/17.
|
interface |
TranscriptDBAdaptor<Transcript>
Created by imedina on 30/11/15.
|
interface |
VariantAnnotationDBAdaptor<T>
Deprecated.
|
interface |
VariantDBAdaptor<T>
Created by imedina on 26/11/15.
|
interface |
XRefDBAdaptor<XRef>
Created by imedina on 30/11/15.
|
Modifier and Type | Method and Description |
---|---|
abstract CellBaseDBAdaptor |
DBAdaptorFactory.getMetaDBAdaptor(String species) |
abstract CellBaseDBAdaptor |
DBAdaptorFactory.getMetaDBAdaptor(String species,
String assembly) |
Modifier and Type | Class and Description |
---|---|
class |
ClinicalLegacyMongoDBAdaptor
Deprecated.
|
class |
ClinicalMongoDBAdaptor
Created by fjlopez on 06/12/16.
|
class |
ConservationMongoDBAdaptor
Deprecated.
|
class |
GeneMongoDBAdaptor
Created by imedina on 25/11/15.
|
class |
GenomeMongoDBAdaptor
Created by imedina on 07/12/15.
|
class |
MetaMongoDBAdaptor
Created by fjlopez on 07/06/16.
|
class |
ProteinMongoDBAdaptor
Created by imedina on 01/12/15.
|
class |
ProteinProteinInteractionMongoDBAdaptor
Created by imedina on 13/12/15.
|
class |
RegulationMongoDBAdaptor
Created by imedina on 07/12/15.
|
class |
RepeatsMongoDBAdaptor
Created by fjlopez on 10/05/17.
|
class |
TranscriptMongoDBAdaptor
Created by swaathi on 27/11/15.
|
class |
VariantMongoDBAdaptor
Created by imedina on 26/11/15.
|
class |
XRefMongoDBAdaptor
Created by imedina on 07/12/15.
|
Modifier and Type | Method and Description |
---|---|
CellBaseDBAdaptor<org.bson.Document> |
MongoDBAdaptorFactory.getMetaDBAdaptor(String species) |
CellBaseDBAdaptor<org.bson.Document> |
MongoDBAdaptorFactory.getMetaDBAdaptor(String species,
String assembly) |
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