Package | Description |
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org.opencb.cellbase.app.cli.main.annotation |
Modifier and Type | Class and Description |
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class |
CellBaseLocalVariantAnnotator
Created by fjlopez on 22/09/15.
|
class |
CellBaseWSVariantAnnotator
Created by fjlopez on 02/03/15.
|
class |
PopulationFrequenciesAnnotator
Created by fjlopez on 18/07/16.
|
class |
VcfVariantAnnotator
Created by fjlopez on 28/04/15.
|
Constructor and Description |
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BenchmarkTask(VariantAnnotator variantAnnotator,
org.opencb.biodata.tools.sequence.FastaIndexManager fastaIndexManager) |
Constructor and Description |
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JsonStringAnnotatorTask(List<VariantAnnotator> variantAnnotatorList)
Deprecated.
|
JsonStringAnnotatorTask(List<VariantAnnotator> variantAnnotatorList,
boolean normalize,
org.opencb.biodata.tools.variant.VariantNormalizer.VariantNormalizerConfig variantNormalizerConfig)
Deprecated.
|
VariantAnnotatorTask(List<VariantAnnotator> variantAnnotatorList) |
VcfStringAnnotatorTask(htsjdk.variant.vcf.VCFHeader header,
htsjdk.variant.vcf.VCFHeaderVersion version,
List<VariantAnnotator> variantAnnotatorList,
VcfStringAnnotatorTask.SharedContext sharedContext)
Deprecated.
|
VcfStringAnnotatorTask(htsjdk.variant.vcf.VCFHeader header,
htsjdk.variant.vcf.VCFHeaderVersion version,
List<VariantAnnotator> variantAnnotatorList,
VcfStringAnnotatorTask.SharedContext sharedContext,
boolean normalize,
org.opencb.biodata.tools.variant.VariantNormalizer.VariantNormalizerConfig variantNormalizerConfig)
Deprecated.
|
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